API

ctrappy.scan

Main ctrappy functionality.

ctrappy.tracking

Code for detecting, tracking and colocalizing spots.

ctrappy.gui_figures

Functions for calculating and plotting useful quantities from Experiments.

ctrappy.gui_cpa_figs

Functions for calculating and plotting useful quantities from Experiments using Change Point Analysis (CPA).

ctrappy.file

Code for opening and saving files.

ctrappy.image

This module contains the Image class for opening a C-trap scan image.

ctrappy.diffusion

Calculate the diffusion coefficient from a track.

ctrappy.stepfinder

Run step finding on a bleaching trace.