lv_queuetrk_api.cpp File Reference

#include "std_incl.h"
#include "utils.h"
#include "labview.h"
#include "QueuedTracker.h"
#include "threads.h"
#include "lv_qtrk_api.h"
#include "ResultManager.h"
#include "FisherMatrix.h"
#include "BeadFinder.h"
#include "cuda_runtime.h"

Go to the source code of this file.

Functions
CDLL_EXPORT void DLL_CALLCONV	qtrk_free_all ()
void	SetLVString (LStrHandle str, const char *text)
std::vector< std::string >	LVGetStringArray (int count, LStrHandle *str)
MgErr	FillErrorCluster (MgErr err, const char *message, ErrorCluster *error)
void	ArgumentErrorMsg (ErrorCluster *e, const std::string &msg)
bool	ValidateTracker (QueuedTracker *tracker, ErrorCluster *e, const char *funcname)
	Verify the referenced tracker is a valid QueuedTracker instance. More...
CDLL_EXPORT int	qtrk_get_debug_image (QueuedTracker *qtrk, int id, LVArray2D< float > **data, ErrorCluster *e)
CDLL_EXPORT void DLL_CALLCONV	qtrk_set_logfile_path (const char *path)
CDLL_EXPORT void DLL_CALLCONV	qtrk_get_computed_config (QueuedTracker *qtrk, QTrkComputedConfig *cc, ErrorCluster *err)
CDLL_EXPORT void DLL_CALLCONV	qtrk_set_ZLUT (QueuedTracker *tracker, LVArray3D< float > **pZlut, LVArray< float > **zcmpWindow, int normalize, ErrorCluster *e)
CDLL_EXPORT void DLL_CALLCONV	qtrk_get_ZLUT (QueuedTracker *tracker, LVArray3D< float > **pzlut, ErrorCluster *e)
CDLL_EXPORT void DLL_CALLCONV	qtrk_get_image_lut (QueuedTracker *qtrk, LVArrayND< float, 4 > **imageLUT, ErrorCluster *e)
CDLL_EXPORT void DLL_CALLCONV	qtrk_set_image_lut (QueuedTracker *qtrk, LVArrayND< float, 4 > **imageLUT, LVArray3D< float > **radialZLUT, ErrorCluster *e)
CDLL_EXPORT void DLL_CALLCONV	qtrk_set_pixel_calib_factors (QueuedTracker *qtrk, float offsetFactor, float gainFactor, ErrorCluster *e)
	Set pixel calibration factors. More...
CDLL_EXPORT void DLL_CALLCONV	qtrk_set_pixel_calib (QueuedTracker *qtrk, LVArray3D< float > **offset, LVArray3D< float > **gain, ErrorCluster *e)
	Set pixel calibration images. More...
CDLL_EXPORT QueuedTracker *	qtrk_create (QTrkSettings *settings, LStrHandle warnings, ErrorCluster *e)
CDLL_EXPORT void	qtrk_destroy (QueuedTracker *qtrk, ErrorCluster *error)
template<typename T >
bool	CheckImageInput (QueuedTracker *qtrk, LVArray2D< T > **data, ErrorCluster *error)
CDLL_EXPORT void	qtrk_queue_u16 (QueuedTracker *qtrk, ErrorCluster *error, LVArray2D< ushort > **data, const LocalizationJob *jobInfo)
CDLL_EXPORT void	qtrk_queue_u8 (QueuedTracker *qtrk, ErrorCluster *error, LVArray2D< uchar > **data, const LocalizationJob *jobInfo)
CDLL_EXPORT void	qtrk_queue_float (QueuedTracker *qtrk, ErrorCluster *error, LVArray2D< float > **data, const LocalizationJob *jobInfo)
CDLL_EXPORT void	qtrk_queue_pitchedmem (QueuedTracker *qtrk, uchar *data, int pitch, uint pdt, const LocalizationJob *jobInfo)
CDLL_EXPORT void	qtrk_queue_array (QueuedTracker *qtrk, ErrorCluster *error, LVArray2D< uchar > **data, uint pdt, const LocalizationJob *jobInfo)
CDLL_EXPORT uint	qtrk_read_timestamp (uchar *image, int w, int h)
CDLL_EXPORT uint	qtrk_queue_frame (QueuedTracker *qtrk, uchar *image, int pitch, int w, int h, uint pdt, ROIPosition *pos, int numROI, const LocalizationJob *pJobInfo, QueueFrameFlags flags, ErrorCluster *e)
CDLL_EXPORT void	qtrk_clear_results (QueuedTracker *qtrk, ErrorCluster *e)
CDLL_EXPORT void	qtrk_build_lut_plane (QueuedTracker *qtrk, LVArray3D< float > **data, uint flags, int plane, ErrorCluster *err)
CDLL_EXPORT void	qtrk_finalize_lut (QueuedTracker *qtrk, ErrorCluster *e)
CDLL_EXPORT int	qtrk_get_queue_len (QueuedTracker *qtrk, int *maxQueueLen, ErrorCluster *e)
CDLL_EXPORT int	qtrk_resultcount (QueuedTracker *qtrk, ErrorCluster *e)
CDLL_EXPORT void	qtrk_flush (QueuedTracker *qtrk, ErrorCluster *e)
CDLL_EXPORT int	qtrk_get_results (QueuedTracker *qtrk, LocalizationResult *results, int maxResults, int sortByID, ErrorCluster *e)
CDLL_EXPORT void	qtrk_get_zlut_cmpprof (QueuedTracker *qtrk, LVArray2D< float > **output, ErrorCluster *e)
CDLL_EXPORT void	qtrk_enable_zlut_cmpprof (QueuedTracker *qtrk, bool enable, ErrorCluster *e)
CDLL_EXPORT void	qtrk_set_localization_mode (QueuedTracker *qtrk, uint locType, ErrorCluster *e)
CDLL_EXPORT int	qtrk_idle (QueuedTracker *qtrk, ErrorCluster *e)
CDLL_EXPORT void	qtrk_compute_zlut_bias_table (QueuedTracker *qtrk, int bias_planes, LVArray2D< float > **lvresult, int smpPerPixel, int useSplineInterp, ErrorCluster *e)
CDLL_EXPORT void	qtrk_set_zlut_bias_table (QueuedTracker *qtrk, LVArray2D< float > **biastbl, ErrorCluster *e)
CDLL_EXPORT void DLL_CALLCONV	qtrk_generate_gaussian_spot (LVArray2D< float > **image, vector2f *pos, float sigma, float I0, float Ibg, int applyNoise)
CDLL_EXPORT void DLL_CALLCONV	qtrk_generate_image_from_lut (LVArray2D< float > **image, LVArray2D< float > **lut, float *LUTradii, vector2f *position, float z, float M, float sigma_noise)
CDLL_EXPORT void	qtrk_dump_memleaks ()
CDLL_EXPORT void	qtrk_get_profile_report (QueuedTracker *qtrk, LStrHandle str)
CDLL_EXPORT void	qtrk_compute_fisher (LVArray2D< float > **lut, QTrkSettings *cfg, vector3f *pos, LVArray2D< float > **fisherMatrix, LVArray2D< float > **inverseMatrix, vector3f *xyzVariance, int Nsamples, float maxPixelValue)
CDLL_EXPORT void	qtrk_find_beads (uint8_t *image, int pitch, int w, int h, int *smpCornerPos, int roi, float imgRelDist, float acceptance, LVArray2D< uint32_t > **output)
CDLL_EXPORT void	qtrk_test_array_passing (int n, LVArray< float > **flt1D, LVArray2D< float > **flt2D, LVArray< int > **int1D, LVArray2D< int > **int2D)
CDLL_EXPORT void	qtrk_simulate_tracking (QueuedTracker *qtrk, int nsmp, int beadIndex, vector3f *centerPos, vector3f *range, vector3f *outBias, vector3f *outScatter, float photonsPerWell, ErrorCluster *e)
CDLL_EXPORT void	qtrkcuda_set_device_list (LVArray< int > **devices)
CDLL_EXPORT int	qtrkcuda_device_count (ErrorCluster *e)
CDLL_EXPORT void	qtrkcuda_get_device (int device, CUDADeviceInfo *info, ErrorCluster *e)
CDLL_EXPORT void	qtrkcuda_enable_texture_cache (QueuedTracker *qtrk, int enable, ErrorCluster *e)

Variables
static Threads::Mutex	trackerListMutex
static std::vector< QueuedTracker * >	trackerList

Detailed Description

Labview API for the functionality in QueuedTracker.h

Definition in file lv_queuetrk_api.cpp.

Function Documentation

CheckImageInput()

template<typename T >

bool CheckImageInput	(	QueuedTracker *	qtrk,
		LVArray2D< T > **	data,
		ErrorCluster *	error
	)

Definition at line 260 of file lv_queuetrk_api.cpp.

{
    if (!data) {
        ArgumentErrorMsg(error, "Image data array is empty");
        return false;
    } else if( (*data)->dimSizes[1] != qtrk->cfg.width || (*data)->dimSizes[0] != qtrk->cfg.height ) {
        ArgumentErrorMsg(error, SPrintf( "Image data array has wrong size (%d,%d). Should be: (%d,%d)", (*data)->dimSizes[1], (*data)->dimSizes[0], qtrk->cfg.width, qtrk->cfg.height));
        return false;
    }
    return true;
}

qtrk_read_timestamp()

CDLL_EXPORT uint qtrk_read_timestamp	(	uchar *	image,
		int	w,
		int	h
	)

Definition at line 324 of file lv_queuetrk_api.cpp.

{
    if (w*h<4) return 0;

    uint ts;
    uchar *timestamp = (uchar*)&ts;
    // Assume little endian only
    for (int i=0;i<4;i++)
        timestamp[i] = image[i];
    return ts;
}

Variable Documentation

trackerList

std::vector<QueuedTracker*> trackerList

static

Definition at line 18 of file lv_queuetrk_api.cpp.

trackerListMutex

Threads::Mutex trackerListMutex

static

Definition at line 17 of file lv_queuetrk_api.cpp.